Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------MISVDFSKGLVPTIILDDQNGDVLMLAYMNEESYQKTLETGYTWFFSRSRNELWNKGATSGHTQKVKQIWTDCDNDTLLIRVTQIGPACHTGKKSCFFNLIKEDF-------------
1ZPS Chain:A ((8-131))
VNILLNFRHNINGEDLIIAVAQDHETGEVLMVAYMNREALRRTLETGTAHYWSTSRGKLWLKGESSGHVQRVKDVLVDCDGDAVVLKVEQEGGACHTGYRSCFYRSIDGDELKVREDAVKVFDP
General information:
TITO was launched using:
RESULT:
Template:
1ZPS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33792 for 716 contacts (-47.2/contact) +
2D Compatibility (PS) -11624 + (NN) -4766 + (LL) 0
1D Compatibility (HY) -7600 + (ID) 2300
Total energy: -60082.0 ( -83.91 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_1ZPS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZPS-query.scw
PDB file :
Tito_Scwrl_1ZPS.pdb
: