Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIRIIGSVGSGKTTLAKKLSEWYQIDYFETDRIVWKREGIEV------------RRTDIEKIAVLNKILQQENWIIE---GVHLEAWVNESFDQADVIIFLNLP----------KKQIRSQLI-----KRQIKQLLRLEAAHYQVKLNMLNKMFYWDDLFDQRTKPLIAEKMAQTPTKWLVVTEKTALQEIQKKLLQIISSRDIL
3TRF Chain:A ((8-159))
--IYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGADIAWIFEMEGEAGFRRREREMIEALCKL---DNIILATGGGVVLDEKNRQQISETGVVIYLTASIDTQLKRIGQKGEMRRPLFIKNNSKEKLQQLNEIRKPLYQA---MADLVYPTDDL----------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3TRF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50149 for 807 contacts (-62.1/contact) +
2D Compatibility (PS) -13061 + (NN) -5634 + (LL) 5504
1D Compatibility (HY) -8400 + (ID) 1900
Total energy: -73640.0 ( -91.25 by residue)
QMean score : 0.335
(partial model without unconserved sides chains):
PDB file :
Tito_3TRF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TRF-query.scw
PDB file :
Tito_Scwrl_3TRF.pdb
: