Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGYRKLGRTSSQRKALLRDLATDLIVFERIETTEARAKEIRKVVEKLITSGKKGDLHARRQAAAFIRHEVVEVVQVDAKGKDGSTVKKNRPVYALQKLFDDVAPRYAERQGGYTRILKKGPRRGDGAPMVIIELV
4IO9 Chain:K ((8-115))
---RKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRR------------LVAQDIHDKD-----------VVRKVMDEVAPKYAERPGGYTRILRVGTRRGDGVTMALIEL-
General information:
TITO was launched using:
RESULT:
Template:
4IO9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20895 for 729 contacts (-28.7/contact) +
2D Compatibility (PS) -12170 + (NN) -8921 + (LL) 2280
1D Compatibility (HY) -7600 + (ID) 3150
Total energy: -50456.0 ( -69.21 by residue)
QMean score : 0.604
(partial model without unconserved sides chains):
PDB file :
Tito_4IO9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IO9-query.scw
PDB file :
Tito_Scwrl_4IO9.pdb
: