Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLIKGLLSPNSKVSPKDYKVYMRVLSFVFSVCSLIMIVSSFLHTFESNFTKGFSFGSGIALFAGSFYFLVITFSEKRFQHYYTKVFDERNQFIANMSCRLLFLLSVLVLVVLCLINVWFGITFSYAKFLLLILSFVLYGYLLIYFILQKLL
1VR4 Chain:A ((1-103))
----------MIVTTTSGIQGKEIIEYIDIVNGEAIMGANIVRDLFASVRD---------------------VVGGRAGSYESKLKEARDIAMDEMKELAKQKGA----------NAIVGVDVDYEVVRDGMLMVAVSGTAVRI-------
General information:
TITO was launched using:
RESULT:
Template:
1VR4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73020 for 687 contacts (-106.3/contact) +
2D Compatibility (PS) -10822 + (NN) 359 + (LL) 4636
1D Compatibility (HY) -400 + (ID) 600
Total energy: -79847.0 ( -116.23 by residue)
QMean score : 0.209
(partial model without unconserved sides chains):
PDB file :
Tito_1VR4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VR4-query.scw
PDB file :
Tito_Scwrl_1VR4.pdb
: