Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIFTYNREHVGDTLMVIVKDSQGAKLDVDRRGQVARVYLQDSKETVAWNIFEVSSLIVIEGAGQITLSDQDIKILNAELLKEGFEDSLVNNIEPT---FVVAQIKEMIDHPDSDHLHICQVEINDGKTVQIVCGAPNASVGLKTVAALPGAMMPN-GSLIFPGKLRGEDSFGMLCSARELALPNAPQVRGIIELSDQVIVGESFDANKHWKN
2AKW Chain:B ((19-125))
------------------------------------------------------------------------EVLEERLAGLGFETDRIERVFPIPRGVVFARVLEAHPIPGT---RLKRLVLDAGRTVEVVSGAENARKGIGVALALPGTELPGLGQKVGERVIQGVRSFGMALSPRELGVGEYGGGLLEFPEDALPPGTPLSEAWPEEVV
General information:
TITO was launched using:
RESULT:
Template:
2AKW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49237 for 646 contacts (-76.2/contact) +
2D Compatibility (PS) -11794 + (NN) -8287 + (LL) 5944
1D Compatibility (HY) -5600 + (ID) 1700
Total energy: -70674.0 ( -109.40 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_2AKW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2AKW-query.scw
PDB file :
Tito_Scwrl_2AKW.pdb
: