Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLEAKKLGFYHKKDQ-WLFKEINLEVAPGQVLGIFGQSGCGKTSLSKVLAGFLHPRSGEVLVDGSNL----PNKAFRPVQLIQQHPE----------KTMNPLWPMKKSLEEAYYP-SRDLLDAFGIQEKW---LNRRPSELSGGELQRFSIVRSLHPETKYLIADEMTTMLDSITQASVWKSLLEIVKDRNLGLIVISHDFAMLEKLCNQCYMIEENRIVSFNGD
2FGK Chain:A ((11-222))
-----RNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--LREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICKGRT--VIIIAHRLSTV-KNADRIIVMEKGKIVEQGKH
General information:
TITO was launched using:
RESULT:
Template:
2FGK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95722 for 1393 contacts (-68.7/contact) +
2D Compatibility (PS) -19698 + (NN) -1029 + (LL) 752
1D Compatibility (HY) -17200 + (ID) 3100
Total energy: -135997.0 ( -97.63 by residue)
QMean score : 0.421
(partial model without unconserved sides chains):
PDB file :
Tito_2FGK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FGK-query.scw
PDB file :
Tito_Scwrl_2FGK.pdb
: