Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIDVRLINGIALAFEGDAVYSLYIRRHLIMQ-GFTKPNQLHRKATQYVSANAQALLINAMLEENILTDEEQLIYKRGRNANSHTKAKNADIITYRMSTGFEALMGYLDMTGQIKRLETLIQWCIETIEK
3N3W Chain:A ((35-140))
-------NNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGD--------FILMSVAEENNG----GKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFP
General information:
TITO was launched using:
RESULT:
Template:
3N3W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37776 for 720 contacts (-52.5/contact) +
2D Compatibility (PS) -11413 + (NN) -4507 + (LL) 2060
1D Compatibility (HY) -5200 + (ID) 1000
Total energy: -57836.0 ( -80.33 by residue)
QMean score : 0.217
(partial model without unconserved sides chains):
PDB file :
Tito_3N3W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N3W-query.scw
PDB file :
Tito_Scwrl_3N3W.pdb
: