Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVKLFAIHLFFIVISFGIKYYHLQGPNLIWNMTLALI-ALDFAYLTSLFKK-----KILIGLFALAWFFFYPNTFYMLT--------DIIHM----------HFVGDVLYNKTNLILYILYVSSILFGF------LSGIESFSVIMRKFRISNIFLRWGIIGIVSFVSSFGIHIGRYARLNSWDILTKPQVVINELLAVPSRDSFHFILGF-----TFLQVLCLIFMDYSAGKKLEK
3BGY Chain:A ((12-237))
--ITIFSENEYNEIVEMLRDYSN--GDNLEFEVSFKNINYPNFMRITEHYINITPENKIESNNYLDISLIFPDKNVYRVSLFNQEQIGEFITKFSKASSNDISRYIVSLDPSDDIEIVYKNRGSGKLIGIDNWAITIKSTEEIPLVAGKSKISKPKITGSERIMYRYKTRYSFTINKNSRIDITDVKSSP--IIWKLMTVPSNYELELELINKIDINTLESELLNVFMIIQD------
General information:
TITO was launched using:
RESULT:
Template:
3BGY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -212883 for 1256 contacts (-169.5/contact) +
2D Compatibility (PS) -20605 + (NN) -6277 + (LL) 1180
1D Compatibility (HY) -8000 + (ID) 1750
Total energy: -248335.0 ( -197.72 by residue)
QMean score : 0.205
(partial model without unconserved sides chains):
PDB file :
Tito_3BGY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BGY-query.scw
PDB file :
Tito_Scwrl_3BGY.pdb
: