Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRREVIVFLENQGAIVQGYVSSQTEILLAGHKQLDLFEPDKRSRKYEAALSRIATGQAITILSEEAFFNLVKTSQI
3SQD Chain:A ((28-86))
-QVQQYIKKLYILGGEVAESA-QKCTHLIASKVT--------RTVKFLTAISV-----VKHIVTPEWLEECFRCQKF
General information:
TITO was launched using:
RESULT:
Template:
3SQD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22846 for 342 contacts (-66.8/contact) +
2D Compatibility (PS) -6371 + (NN) -3251 + (LL) 888
1D Compatibility (HY) -2000 + (ID) 600
Total energy: -34180.0 ( -99.94 by residue)
QMean score : 0.493
(partial model without unconserved sides chains):
PDB file :
Tito_3SQD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SQD-query.scw
PDB file :
Tito_Scwrl_3SQD.pdb
: