Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIKLIAIDMDGTLLNDE-KKIPKENIQAIKEATQAGIKIVLCTGRPMSGILPYFNELGLTK--EEYIIMNNGCSTYSTKDWQLIDSATLTHDELIFLEEVVKEFPNVCLTLTAENTFYAVGEEVPEIVAYDADLVFTKAKSTSLDALRNQEEIVFQAMYMGLDADVTAF--QEAVEEALISKFSGVRSQDY--IYEIMPQGVTKARGLKSLIAKLGLDINQVMAIGDAPNDIELLDLVPNSVAMGNASDEIKSRCKYITVDNNKAGVAKAIYDYALR |
| 2RAR Chain:A ((1-260)) | MTKALFFDIAGTLVSFETHRIPSSTIEALEAAHAKGLKIFIATGRP-KAIINNLSELQDRNLIDGYITMNGA---YCFVGEEVIYKSAIPQEEVKAMAAFCEKKGVPCIFVEEHNISVCQPNEMVKKIFYDF-LHVNVIPTVSFEEASNKEVI-----------QMTPFITEEEEKEVLPSIPTCEIGRWYPAFADVTAKGDTKQKGIDEIIRHFGIKLEETMSFGDGGNDISMLRHAAIGVAMGQAKEDVKAAADYVTAPIDEDGISKAMKHFGII |
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General information:
TITO was launched using:
| RESULT:
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Template: 2RAR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -116690 for 2242 contacts (-52.0/contact) +
2D Compatibility (PS) -27174 + (NN) -7740 + (LL) 1380
1D Compatibility (HY) -14400 + (ID) 3500
Total energy: -168124.0 ( -74.99 by residue)
QMean score : 0.510
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