Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEKAILLIILIAFVIIAIIKIALLKLYMNTIKPKVDNEGNIITKPVKDD--------LTPEEREEREFDKDW
1NY4 Chain:A ((1-71))
MAEDEGYPAEVIEIIGRTGTTGDVTQVKVRILEGR--DKGRVIRRNVRGPVRVGDILILRETEREAREIKSRR
General information:
TITO was launched using:
RESULT:
Template:
1NY4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14067 for 296 contacts (-47.5/contact) +
2D Compatibility (PS) -6260 + (NN) 2632 + (LL) 116
1D Compatibility (HY) -1200 + (ID) 600
Total energy: -19379.0 ( -65.47 by residue)
QMean score : 0.439
(partial model without unconserved sides chains):
PDB file :
Tito_1NY4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NY4-query.scw
PDB file :
Tito_Scwrl_1NY4.pdb
: