Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAQLYYKYGTMNSGKTIEILKVAHNYEEQGKPVVIMTSALDTRDEFGVVSSRIGMRREAVPISDDMDIFSYIQNLPQKPYCVLIDECQFLSKKNVYDLARVVDDLDVPVMAFGLKNDFQNNLFEGSKHLLLLADKIDEIKTICQYCSKKATMVLRTENGKPVYEGDQIQIGGNETYIPVCRKHYFNPDI
2WVJ Chain:A ((19-191))
-GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTR---------------ALPACLLRDVAQEALGVA----VIGIDEGQFFP--DIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYSKRLGTEKEVE-----VIGGADKYHSVCRLCYFK---
General information:
TITO was launched using:
RESULT:
Template:
2WVJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95323 for 1280 contacts (-74.5/contact) +
2D Compatibility (PS) -16911 + (NN) -5398 + (LL) 1600
1D Compatibility (HY) -8800 + (ID) 2100
Total energy: -126932.0 ( -99.17 by residue)
QMean score : 0.437
(partial model without unconserved sides chains):
PDB file :
Tito_2WVJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WVJ-query.scw
PDB file :
Tito_Scwrl_2WVJ.pdb
: