Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------MNKRILNSQFAVYKNWPSW------LLLLFACFMVYLFFFVGLTL--GGVGIVLVSS---------VLYKFSSYTFF--EFINLFNNIYGELGT----------FSFSAFLLLIWVKFVEKR---PFSE-LGFSTKFKRTLWSLIKGWSIGFILF--SISVI----------------TAYILGGLDFHSYDVSKATIFYVVTLLPFWLIQSGTE--ELLTRGWLLPLINHRFHLAVAI-GVSSTLFGILHLVNAHVTFLSIVSII-CSGVLMSLYMIKS-----GNI-WSV-AAL-HGAWNFSQGNLYGIAVSGQKAGASLLHFT-VKENAPD-----------WISGGAFG--------IEGSLISIFVLLAAIIYLLWLIKTEETD |
| 4W4T Chain:A ((27-420)) | DVTVEMEADAVLDAEIALGKALPPVTGALRTILLTGATGFLGAFLLEELCRRTDARIYCLVRSKTEQEGMNRIRKNLESYSLWNEALAPRIVPVRGDIGQPLLGLSEKEFQRLSEEIDAIYHNGALVNFLYPYESMRAANVLGTREILRLATRTRIKPLHYVSTVSVLPLGRKAPIREDEPLEGPSSLVGGYAQSKWVAEKLVREASRRGLPVTILRPGRVTGHSRTGAWNTDDLVCRTLKGCVRMGVAPSVDALLDLTPVDYVSSAIVDLSMRPESIGQTYHLVNPQFVRADEMWNYMRAFGYGLRVLPYDQWLSELGSAASSDSELGDLLMFLQQVPSVGGPRMVVCDSGDTLKALGGTGTSCPSVDASLISTY--LSSLVHRGFLKAPE--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4W4T.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -238582 for 2185 contacts (-109.2/contact) +
2D Compatibility (PS) -28985 + (NN) 10268 + (LL) 812
1D Compatibility (HY) 19200 + (ID) 950
Total energy: -238237.0 ( -109.03 by residue)
QMean score : -0.020
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