Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTKIIGVLGLGIFGQTLAQELSNFEQDVIAIDSNPENVQAVAEVVTKAAIGDITDLAFLKHIGISDCDTVIIATGNSLESSVLAVMHCKKLGVP-QVIAKARNLVYEEVLYEIGADLVISPERESGQNVAANLMRNKITDVFQIESDISVIEFKIPKSWVGKTVEQLNIRHKFDLNLIGIRKAKNKPIDTEVPINSPLEEGIILVAIANSDAFQRYDYLGYFN
4GX5 Chain:A ((349-477))
---ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDHVVV----YGDATVGQTLRQAGIDRASGIIVTT-NDDSTNIFLTLACRHLHSHIRIVARANGEENVDQLYAAGADFVVS-NASVGANILGNLLEHK--------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4GX5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94556 for 946 contacts (-100.0/contact) +
2D Compatibility (PS) -13923 + (NN) -5233 + (LL) 6552
1D Compatibility (HY) -6000 + (ID) 1850
Total energy: -115010.0 ( -121.58 by residue)
QMean score : 0.546
(partial model without unconserved sides chains):
PDB file :
Tito_4GX5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GX5-query.scw
PDB file :
Tito_Scwrl_4GX5.pdb
: