Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIALFAGGDLTYFE----YDFDYFVGIDRGSLFLLKNGLSLDMAVGDFDSITEDELLYIKHYCSNIVSASAEKNDTDTELALKTIFKEFPEAQVTVFGAFGGRIDHMMSNIFLPSDTDL--EPFMSQIRLKDEQNIVTYLPSGKNQVSRIEGMSYVSFMPE-SESTLQISGAKYELNKSNYFKKKMYSSNEFMTSPIEVELKDGYLIIIYSKDRG
3L8M Chain:A ((1-212))
-MKANLLCGNRNLPKHILVEHKHEHWIGIDRGTLILLESGITPQFAVGDFDSISDSERNFIQ-QQIEINPYN---DDTDLALGIDQAVKRGY-RNIDVYGATGGRLDHFMGALQILEKPEYAKMNI--NIKLIDDTNEIQFIQKGQFN-V----FPYISFIPVI-PTVISLKGFKYNLQNE------LTISNEL---CGNIEIIEGSVLMIRSKDE-
General information:
TITO was launched using:
RESULT:
Template:
3L8M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81404 for 1396 contacts (-58.3/contact) +
2D Compatibility (PS) -20305 + (NN) -9626 + (LL) 1644
1D Compatibility (HY) -12000 + (ID) 2900
Total energy: -124591.0 ( -89.25 by residue)
QMean score : 0.412
(partial model without unconserved sides chains):
PDB file :
Tito_3L8M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L8M-query.scw
PDB file :
Tito_Scwrl_3L8M.pdb
: