Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MITKEQYFYFRQLDDFKHFTIEQFDHIVSHIKHRTALKNHTLFFEGDYREKLFLIQSGHVKIEQSDASGSFIYTDYVRQGTVFPYGGLFLDDDYHFSAV-AITDIEYFSLPMALYEEYSLQNINQMKHLCRKYSKLLRVHEIRLRNMVTSSASMRVIQSLATLLLQVPTERGH---LPFPITTIEIANMSGTTRETVSHVLKELRQKDIVEMKGKKLLYNNKNYFKKFIE
3RYP Chain:A ((29-205))
----------------------------------------TLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQ-PDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYG---------
General information:
TITO was launched using:
RESULT:
Template:
3RYP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95758 for 1184 contacts (-80.9/contact) +
2D Compatibility (PS) -18784 + (NN) -7583 + (LL) 4080
1D Compatibility (HY) -9600 + (ID) 2300
Total energy: -129945.0 ( -109.75 by residue)
QMean score : 0.353
(partial model without unconserved sides chains):
PDB file :
Tito_3RYP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RYP-query.scw
PDB file :
Tito_Scwrl_3RYP.pdb
: