Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MREAAQALGFEVLDQRDLVRNLRTHYSRVFEELEARRLELEGKSSQEYLDKMRVGLKNWVEAADNGHSRVGHPTFPRTRLTPICQLPTAAIDSTAGRRRYR
4PNE Chain:A ((227-301))
-LESLRAAGFEILDWEDVSSRTRYFMPQFAEELAAHQHGIADRYGPAV-AGWAAAVCDY--EKYAHDMGYAILTARKPV----------------------
General information:
TITO was launched using:
RESULT:
Template:
4PNE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 6948 for 392 contacts (17.7/contact) +
2D Compatibility (PS) -8009 + (NN) -777 + (LL) 2140
1D Compatibility (HY) -2400 + (ID) 700
Total energy: -2798.0 ( -7.14 by residue)
QMean score : 0.317
(partial model without unconserved sides chains):
PDB file :
Tito_4PNE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PNE-query.scw
PDB file :
Tito_Scwrl_4PNE.pdb
: