Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MNAIANLAATPGADLGECLADLAVDALIDEAELSPKPALVDRRGNGAHADL------------HLGLMQASALSLWPCFKEMADAAQRHGRIDARLRGVLGQLGRDGEAAMLRTTEGVNT---HRGAIWALGLLVAAAALEPRRTQAGEVAARAGRIALLDDPAAAIGDSHGERVRRRY--GVGGAREEARLCFPRAVRHGLPQLWRSREGGAGEQNARLDA-----LLAIMSVLDDTCVLHRA--GRVGLAAMQDGARAVLAAGGSASLA--GRRRL--CELDRRLLALNASPGGAADLLAACLFLDRLPAVSGGWAGSL |
| 2GOP Chain:A ((10-347)) | TFAKFAYLSD-PRTK-GELVAYVLTKANLKDNKYENTIVIENLKNNARRFIENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKNIRSLEWNEDSRKLLIVGFKRREVPAWEKTTFWIFDTESEEVIEEFEKPRFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEKVSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYDGKEVMGILDEVDRGVGQAKIKDGKVYFTLFEEGSVNLYIWDGEIKPIAKGRHWIMGFDVDEIVVYLKETATRLRELFTWDGEEKQLTDYNDPIFAKL |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GOP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -54060 for 2099 contacts (-25.8/contact) +
2D Compatibility (PS) -28576 + (NN) 15287 + (LL) 228
1D Compatibility (HY) -8800 + (ID) 1700
Total energy: -77621.0 ( -36.98 by residue)
QMean score : -0.003
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