Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------MKKMMQGAAALIALVGAGESMALEWMSNSVGFRYGQQF-------TNPNNPDKFAKRIYSFTHADGYRY--GSNFFNLDVFLSDNRDPRKGTDHGGSEVYAVYRHQLYASRVFDRPLGT-GLVKDYAFTLGFDAS-------RNNNLASAKKRALVFGPTLKF-----NGPGVLDLSLLYYREKNHFGVPGARHPD------------HTFDTTYMLNLTWMRPFKVGNHAAKFQGFVNYVGDKGEDYNDKHTAAETLVRTALMVAALPGDKRQPNLWLGVGYEYWHNKFGVDGGTGSRTS----TPTLNMEFTF------------------------ |
| 1S4P Chain:A ((10-348)) | KTTMDYITPSFGKPKACYVTLVRNKELKGLLSSIKYVENKINKKFPYPWVFLNDEPFTEEFKEAVTKAVSSEVKFGILPKEHWSYPEWINQTKAAEIRADAATKYIYGGSESYRHMCRYQSGFFWRHELLEEYDWYWRVEPDIKLYCDINYDVFKWMQENEKVYGFTVSIHEYEVTIPTLWQTSMDFIKKNPEYLDENNLMSFLSNDNGKTYNLCHFWSNFEIANLNLWR-------SPAYREYFDTLDHQGGFFYERW--GDAPVHSIAAALFLP--KDKIHYFSDIGYHHPPYDNCPLDKEVYNSNNCECDQGNDFTFQGYSCGKEYYDAQGLVKPKNWKKFRE |
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General information:
TITO was launched using:
| RESULT:
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Template: 1S4P.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -34052 for 1968 contacts (-17.3/contact) +
2D Compatibility (PS) -27941 + (NN) -8353 + (LL) -12
1D Compatibility (HY) -7600 + (ID) 1500
Total energy: -79458.0 ( -40.38 by residue)
QMean score : 0.226
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