Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSHAFARWNLLLLVASIFAGLVFAPSVDLSALPTPEARKWVLAEVPSVAVDTTVAGKLAGMSWWGRTVDEEREAESKRVSVGVDGVALIKVDWLLRGIVRDEG--GIFALVAKSAEGPLRRFAAGATLPG-GERLESITEQGIRFSFSQDGNTQGFERKLYAPLP
2LNV Chain:A ((89-159))
---------------------------------------------------------------------------------------PPSTLNLSLTGVMAGDDDSRSIAII-SKD-NEQFSRGVNEEVPGYNAKIVSIRPDRVVLQY--QGRYE--VLGLYSQED
General information:
TITO was launched using:
RESULT:
Template:
2LNV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33649 for 522 contacts (-64.5/contact) +
2D Compatibility (PS) -6946 + (NN) -116 + (LL) 7168
1D Compatibility (HY) -4000 + (ID) 500
Total energy: -38043.0 ( -72.88 by residue)
QMean score : 0.267
(partial model without unconserved sides chains):
PDB file :
Tito_2LNV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LNV-query.scw
PDB file :
Tito_Scwrl_2LNV.pdb
: