Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAMPDEALVYVVDDDQGMLESTVWLLESVG---LKARPFTQG-RDFLDACEGGRHACVLLDVRMPGMGGLNVQDELLARGIDLPVIFVSGHADVPIVVRAFKAGAVDFIEKPYNEQLLLDSVQQALDRHARRRRHHDLDAGLHERLDSLTPRERDVLLPLVRGYTSREVAEQLEVSVKTVDLYRARVMKRMQAQTLPELVGMAIAAGLVDPLRLREGT
3JTE Chain:A ((4-123))
------AKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNS--IDVVITDMKMPKLSGMDILREIKKITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINR------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3JTE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94136 for 872 contacts (-108.0/contact) +
2D Compatibility (PS) -12742 + (NN) -6451 + (LL) 7824
1D Compatibility (HY) -9600 + (ID) 1850
Total energy: -116955.0 ( -134.12 by residue)
QMean score : 0.752
(partial model without unconserved sides chains):
PDB file :
Tito_3JTE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JTE-query.scw
PDB file :
Tito_Scwrl_3JTE.pdb
: