Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MAESAFSERIVQNLLDTDFYKLTMMQAVLHNYPNAEVEWEFRCRNQEDLRLYLPAIREQLEYLAGLAISDEQLAFLERIPFLAPDFIRFLGLFRFNPRYVQTGIENDEFFLRLKGPWLHVILFEVPLLAMISEVRNRARYPAATVEQARERLQEKFDWLRREASAEELAGFKMADFGTRRRFSYRVHEAVVSGLKEDFPGCFVGTSNVHLARKLDLKPLGTMAHEWLMAHQQLGPRLIDSQSAALDCWVREYRGLLGIALTDCITTDAFLRDFDLYFAKLFDGLRHDSGDPLLWAEKTIAHYLKLGIDPLTK---TLVFSDGLDLPRALKIYRALQGRINVSFGIGTHFTCDLPGVEPMNIVVKMSACNGHPVAKISDTPGKAQCRD-----PDFIHYLKHVFQVA----------------------------------------- |
| 1YTK Chain:A ((7-395)) | MNVFNTASDEDIKKGLASDVYFERTISAIGDKCNDLRVAMEATVSGPLDTWINFTGLDEVLKLLEGLDV---DLYAIPEGTILFP----------------RDANGLPVPFIRVEGRYCDFGMYETAILGFICQASGISTKASKVRLAAGDS--------------------PFFSFGIRRMHPAISPMIDRSAYI----GGADGVSGILGAKLIDQDPVGTMPHALSIML--------GDEEAWKLTLENTKNGQKSVLLIDTYMDEKFAAIKIAEMFDKVDYIRLDTPSSRRGNFEALIREVRWELALRGRSDIKIMVSGGLDENTVKKLREAGAE----AFGVGTSIS----SAKPFDFAMDIVEVNGKPETKRGKMSGRKNVLRCTSCHRIEVVPANVQEKTCICGGSMQNLLVKYLSHGKRTSEYPRPKEIRSRSMKELEYFK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YTK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -152554 for 2746 contacts (-55.6/contact) +
2D Compatibility (PS) -35419 + (NN) -5946 + (LL) 4140
1D Compatibility (HY) -3600 + (ID) 3100
Total energy: -196479.0 ( -71.55 by residue)
QMean score : 0.285
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