Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGPLPVCLPIMLLLLLPSLLLLLLLPGPGSGEASRILRVHRRGILELAGTVGCVGPRTPIAYMKYGCFCGLGGHGQPRDAIDWCCHGHDCCYTRAEEAGCSPKTERYSWQCVNQSVLCGPAENKCQELLCKCDQEIANCLA--QTEYNLKYLFYPQFLCEPDSPKCD
3U8H Chain:A ((13-124))
-----------------------------------------------------TGKEAALSYGFYGCHCGVGGRGSPKDATDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAK-QDSCRSQLCECDKAAATCFARNKTTYNKKYQYYSNKHCRGSTPRC-
General information:
TITO was launched using:
RESULT:
Template:
3U8H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45463 for 735 contacts (-61.9/contact) +
2D Compatibility (PS) -11531 + (NN) -7116 + (LL) 3640
1D Compatibility (HY) -5600 + (ID) 2250
Total energy: -68320.0 ( -92.95 by residue)
QMean score : 0.212
(partial model without unconserved sides chains):
PDB file :
Tito_3U8H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U8H-query.scw
PDB file :
Tito_Scwrl_3U8H.pdb
: