Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLLLPLPLLLFLLCSRAEAGEIIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGRSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPLLCAGVAQGIVSYGRSDAKPPAVFTRISHYRPWINQILQAN
4K60 Chain:A ((1-226))
---------------------IIGGTECKPHSRPYMAYLEIVT-NGPSKFCGGFLIRRNFVLTAAHCAGRSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPF------VPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPLLCAGAAQGIVSYGRSDAKPPAVFTRISHYQPWINQILQAN
General information:
TITO was launched using:
RESULT:
Template:
4K60.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -159784 for 1849 contacts (-86.4/contact) +
2D Compatibility (PS) -23679 + (NN) -7946 + (LL) 2204
1D Compatibility (HY) -28800 + (ID) 10850
Total energy: -228855.0 ( -123.77 by residue)
QMean score : 0.711
(partial model without unconserved sides chains):
PDB file :
Tito_4K60.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4K60-query.scw
PDB file :
Tito_Scwrl_4K60.pdb
: