Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATVEPETTPTPNPPTTEEEKTESNQEVANPEHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV
2V8W Chain:A ((32-217))
-------------------------------EHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTAT-----TKNRFVV
General information:
TITO was launched using:
RESULT:
Template:
2V8W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88051 for 1383 contacts (-63.7/contact) +
2D Compatibility (PS) -19127 + (NN) -10246 + (LL) 936
1D Compatibility (HY) -26400 + (ID) 9050
Total energy: -151938.0 ( -109.86 by residue)
QMean score : 0.694
(partial model without unconserved sides chains):
PDB file :
Tito_2V8W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2V8W-query.scw
PDB file :
Tito_Scwrl_2V8W.pdb
: