Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDVLSPGQGNNTTSPPAPFETGGNTTGISDVTVSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLVLPMAALYQVLNKWTLGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLISIPPMLGWRTPEDRSD--PDACTISKDHGYTIYSTFG----AFYIPLLLMLVLYGRIFRAA---------------RFRIRKTVKKVEKTGADTRHGASPAPQPKKSVNGESGSRNWRLGVESKAGGALCANGAVRQGDDGA-----------ALEVIEVHRVGNSKEHLPLPSEAGPTPCAPASFERK--------------NERNAEAKRKMA----------LARERKTVKTLGIIMGTFILCWLPFFIVALVLPFCESSCHMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFCRQ |
| 4DAJ Chain:A ((9-440)) | --------------------------------IWQVVFIAFLTGFLALVTIIGNILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNRWALGNLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAWVISFVLWAPAILFWQYFVGKRTVPPGECFIQFLSEPTI--TFGTAIAAFYMPVTIMTILYWRIYKETEKMNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTN-GVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYLIKE---AQTLSAILLAFIITWTPYNIMVLVNTFCDSC--IPKTYWNLGYWLCYINSTVNPVCYALCNKTFRTTFKT--------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4DAJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -194248 for 2666 contacts (-72.9/contact) +
2D Compatibility (PS) -38188 + (NN) -7854 + (LL) 1444
1D Compatibility (HY) -36000 + (ID) 6150
Total energy: -280996.0 ( -105.40 by residue)
QMean score : 0.252
|
|
|