Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDHQDPYSVQATAAIAAAITFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRRTWCEVYLALDVLFCTSSIVHLCAISLDRYWAVSRALEYNSKRTPRRIKCIILTVWLIAAVISLPPLI---YKGDQGPQPRGRPQCKLNQEAWYILASSIGSFFAPCLIMILVYLRIYLIAKRSN-----RRGPRAKGGPGQGE---SKQPRPDHGGALASAKL-PALASVASAREVNGHSKSTGEKEEGETPEDTGTRALPPSWAALPNS-GQGQKEGVCGASPEDEAEEEEEEEEECEPQAVPVSPASACSPPLQQP-QGSRVLATLRGQVLLGRGVGAIGGQWWRRRAQLTREKRFTFVLAVVIGVFVLCWFPFFFSYSLGAICPKHCKVPHGLFQFFFWIGYCNSSLNPVIYTIFNQDFRRAFRRILCRPWTQTAW |
| 4U15 Chain:A ((8-398)) | -------TIWQVVFIAFLTGFLALVTIIGNILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNRWALGNLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAWVISFVLWAPAILFWQYFVGKRTVPPGECFIQFLSEPTITFGTAIAAFYMPVTIMTILYWRIYKETEKMNIFEMLRIDEGGGSGGDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRR-----------------------------AALINMVFQMGETGVAGFTNSLRMLQQKRWDEA----AVNLAKSRWYN---QTPNRAKRVITTFR------------TGTW---DAYLIKEKKAAQTLSAILLAFIITWTPYNIMVLVNTFC-DSC-IPKTYWNLGYWLCYINSTVNPVCYALCNKTFRTTFKTL---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4U15.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -202820 for 2807 contacts (-72.3/contact) +
2D Compatibility (PS) -38889 + (NN) -7686 + (LL) 2296
1D Compatibility (HY) -36000 + (ID) 5600
Total energy: -288699.0 ( -102.85 by residue)
QMean score : 0.253
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