Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MANTTGEPEEVSGALSPPSASAYVKLVLLGLIMCVSLAGNAILSLLVLKERALHKAPYYFLLDLCLADGIRSAVCFPFVLASVRHGSSWTFSALSCKIVAFMAVLFCFHAAFMLFC-ISVTRYMAIAHHRFYAKRMTLWTCAAVICMAWTLSVAMAFPPVF-------DVGTYKFIREEDQCIF--EHRYFKANDTLGFMLMLAVLMAATHAVYGKLLLFEYRHRKMKPVQMVPAISQNWTFHGPGATGQAAANWIAGFGRGPMPPTLLGIRQNGHAASR-RLLGMDEVKGEKQLGRMFYAITLLFLLLWSPYIVACYWRVFVKACAVPHRYLATAVWMSFAQAAVNPIVCFLLNKDLKKCLRTHAPCWGTGGAPAPREPYCVM |
2Y04 Chain:A ((16-296)) | --------------------------LLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGT-WLWGSFLCELWTSLDVL-CVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRV--------YREAKEQ----------------------------------------------------SRVMLMREHKALKTLG----IIMGVFTLCWLPFFLVNIVNVFNRDL-VPDWLFVAFNWLGYANSAMNPII-YCRSPDFRKAFKRLLA----------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Y04.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -265173 for 1876 contacts (-141.4/contact) +
2D Compatibility (PS) -26867 + (NN) -14961 + (LL) 4644
1D Compatibility (HY) -28400 + (ID) 3550
Total energy: -334307.0 ( -178.20 by residue)
QMean score : 0.286
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