Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDGDNQSENSQFLLLGISESPEQQRILFWMFLSMYLVTVLGNVLIILAISSDSHLHTPMYFFLANLSFTDLFFVTNTIPKMLVNFQSQ---NKAISYAGCLTQLYFLVSL--VTLDNLILAVMAYDRYVATCCPLHYVTAMSPGLCVLLLSLCWGLSVLYGLLLTFLLTRVTFCGPREIHYLFCDMYILLWLACSNTHIIHTALIATGCFIFLTPLGFMTTSYVRIVRT----ILQMPSASKK-YKTFSTCASHLGVVSLFYGTLAMVYLQPLHTYSMKDSVATVMYAVL---TPMMNPFIYRLRNKDMHGAPGRVLWRPFQRPK |
| 2VT4 Chain:A ((23-297)) | -----------------------------------LLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADL-----VVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISA----LVSFLPIMMHWWRDEDPQALKCYQDP----GCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIR--------EHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIY-CRSPDFRKAFKRLLA------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VT4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -214592 for 1793 contacts (-119.7/contact) +
2D Compatibility (PS) -24277 + (NN) -887 + (LL) 4728
1D Compatibility (HY) -23200 + (ID) 3350
Total energy: -261578.0 ( -145.89 by residue)
QMean score : 0.214
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