Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | METANYTKVTEFVLTGLSQTREVQLVLFVIFLSFYLFIL-----PGNILIICTIRLDPHLTSPMYFLLANLALLDIWYS----SITAPKMLIDFFVERKIISFG--GCIAQLFFLHFVGASEMFLLTVMAYDRYAAICRPLHYATIMNRRLCCILVALSWMGGFIHSIIQVALIVRLPF-CGPNELDSYFCDITQVVRIACANTF--PEELVMICSSGLIS-----VVCFIALLMSYAFLLALLKKHSGSGEN---TNRAMSTCYSHITIVVLMF--------GPSIYIYARPFDSFS-LDKVVSVFHTVIFPLLNPIIYTLRNKEVKAAMRKVVTKYILCEEK |
| 3CAP Chain:A ((40-317)) | -------------------------------LAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFV------FGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-----NFRF-----------GENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3CAP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -213880 for 1775 contacts (-120.5/contact) +
2D Compatibility (PS) -24880 + (NN) -6011 + (LL) 6468
1D Compatibility (HY) -21600 + (ID) 3350
Total energy: -263253.0 ( -148.31 by residue)
QMean score : 0.186
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