Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTHTLYPTPFALYPINISAAWHLGPLPVSCFVSNKYQCSLAFGATTGLRVLVVVVPQTQLSFLSSLCLVSLFLHSLVSAHGEKPTKPVGLDPTLFQVVVGILGNFSLLYYYMFLYFRGYKPRSTDLILRHLTVADSLVILSKRIPETMATFGLKHFDNYFGCKFLLYAHRVGRGVSIGSTCLLSV--FQVITINPRNSRWAEMKVKAPTYIGLSNILCWAFHMLVNAIFPIYTTGKWSNNNITKKGDLGYCSAPLSDEV--TKSVYAA-LTSFHDVLCLGLMLWASSSIVLVLYRHKQQVQHICRNNLYPNSSPGNRAIQSILALVSTFALCYALSFITYVYLALFDNS-----------SWWLVNTAALIIACFPTISPFVLMCRDPSRSRLCSICCRRNRRFFHDFRKM |
| 2LNL Chain:A ((45-322)) | -------------------------------------------------------------------------------------------AYALVFLLSLLGNSLVMLVILYS---RVGRSVTDVYLLNLALADLLFALT--LPIWAASKVNGWIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIV-HATRTL----TQ-KRHLVKFVCLGCWGLSMNLSLPFFLFRQAY-HP-----NNSSPVCYEVLGNDTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFKAHM--------------GQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSCLNPIIYAFIGQNFRHGFLKILAMHG--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2LNL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -152352 for 1858 contacts (-82.0/contact) +
2D Compatibility (PS) -27091 + (NN) -10038 + (LL) 9064
1D Compatibility (HY) -22000 + (ID) 2150
Total energy: -204567.0 ( -110.10 by residue)
QMean score : 0.243
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