Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------------------AEAEAAAEVSCGDAVSALIPCGSFLVGAVAGAPSESCCRGAQGLRRMAG----TPGARRALCRCLEQSGPSFG---VLPDRARQL------PALCKLGISIPVSPHTDCDKIQ
1NGK Chain:A ((3-128))
KSFYDAVGGAKTFDAIVSRFYAQVAEDEVLRRVYPEDDLAGAEERLRMFLEQYWGGPRTYSEQRGHPRLRMRHAPFRISLIERDAWLRCMHTAVASIDSETLDDEHRRELLDYLEMAAHSLVNSPF------------
General information:
TITO was launched using:
RESULT:
Template:
1NGK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8249 for 454 contacts (-18.2/contact) +
2D Compatibility (PS) -9080 + (NN) -1306 + (LL) 272
1D Compatibility (HY) -1200 + (ID) 900
Total energy: -20463.0 ( -45.07 by residue)
QMean score : 0.204
(partial model without unconserved sides chains):
PDB file :
Tito_1NGK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NGK-query.scw
PDB file :
Tito_Scwrl_1NGK.pdb
: