Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------------------------------------------------IACPQVNM--YLAQCLPYLKAGGNPSPMC---CNGLNSLKAAAP-----------EKADRQVACNCLKSVANTIP-----GINDDFAKQLPAKCGVNIGVPFSKTVDCNSIN--------
1QPO Chain:A ((116-284))
IATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAVRTGGGVNHRLGLGDAALIKDNHVAAAGSVVDALRAVRNA-APDLPCEVEVDSLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATY-AETGVD---YLAVGALTHSVRVLDIGLDM
General information:
TITO was launched using:
RESULT:
Template:
1QPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32042 for 454 contacts (-70.6/contact) +
2D Compatibility (PS) -9672 + (NN) -7316 + (LL) -88
1D Compatibility (HY) -800 + (ID) 1000
Total energy: -50918.0 ( -112.15 by residue)
QMean score : 0.600
(partial model without unconserved sides chains):
PDB file :
Tito_1QPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QPO-query.scw
PDB file :
Tito_Scwrl_1QPO.pdb
: