Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QDCDAGKLIVCAAAIIGGAEPSASCCSNLKA-----------QQGCLCKYASNPAYSGYINSPTARKTLTSCGIPIPTCPQ
1SIY Chain:A ((7-78))
----QGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR-GINPNNAEALPGKCGVNIP----
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28929 for 395 contacts (-73.2/contact) +
2D Compatibility (PS) -6028 + (NN) 161 + (LL) -60
1D Compatibility (HY) -2400 + (ID) 950
Total energy: -38206.0 ( -96.72 by residue)
QMean score : 0.303
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: