Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VVVRVEEEEKVVCIVTDLRVCLPAVEAG--SQPSVQCCGKLKE-QLSCLCGYLKIPSFTQY-VSSGKAQKVLTACAIPIP-KC
2RKN Chain:A ((1-77))
------AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36332 for 456 contacts (-79.7/contact) +
2D Compatibility (PS) -6896 + (NN) -424 + (LL) 972
1D Compatibility (HY) -4000 + (ID) 1000
Total energy: -47680.0 ( -104.56 by residue)
QMean score : 0.378
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: