Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTCSPMQLSPCATAITSSSPPSALCCAKLKEQ--R-PCLCGYMRNPSLRRF---VS-------TPNARKVSKSCKLPIPRC
3OB4 Chain:A ((427-485))
--------------------HQERCCNELNEFENNQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAP--
General information:
TITO was launched using:
RESULT:
Template:
3OB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7874 for 233 contacts (-33.8/contact) +
2D Compatibility (PS) -4491 + (NN) -196 + (LL) 1052
1D Compatibility (HY) -1600 + (ID) 500
Total energy: -13609.0 ( -58.41 by residue)
QMean score : 0.355
(partial model without unconserved sides chains):
PDB file :
Tito_3OB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OB4-query.scw
PDB file :
Tito_Scwrl_3OB4.pdb
: