Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VCNMSNDEFMKCQPAAAATSNPTTNPSAGCCSALSH--------ADLN--CLCSYKNSPWLSIY-NIDPNRAMQLPAKCGLTMPANC
1SIY Chain:A ((3-79))
-CGQVQGNLAQCIGFLQKGG----VVPPSCCTGVKNILNSSRTTADRRAVCSCL-KAA--AGAVRGINPNNAEALPGKCGVNIPY--
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17314 for 431 contacts (-40.2/contact) +
2D Compatibility (PS) -6463 + (NN) -1073 + (LL) 160
1D Compatibility (HY) -2800 + (ID) 950
Total energy: -28440.0 ( -65.99 by residue)
QMean score : 0.275
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: