Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GPAGCQDDVVALNEACYQYVQKGAPTVPPSQECCDAVKSVDV----------PCVCSYLGSPGVRDNISMEKVFYVSQQCGVSIPGNCGGSMV
1BWO Chain:A ((2-78))
---DCGHVDSLV-RPCLSYVQGG-P--GPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGI-HNLNEDNARSIPPKCGVNLP--------
General information:
TITO was launched using:
RESULT:
Template:
1BWO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23488 for 433 contacts (-54.2/contact) +
2D Compatibility (PS) -6756 + (NN) -903 + (LL) 72
1D Compatibility (HY) -3200 + (ID) 1100
Total energy: -35375.0 ( -81.70 by residue)
QMean score : 0.341
(partial model without unconserved sides chains):
PDB file :
Tito_1BWO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BWO-query.scw
PDB file :
Tito_Scwrl_1BWO.pdb
: