Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VPGQGTCQGDIEGLMKECAVYVQRPGPKVNPSEACCRVVKRSDI----------PCACGRITASVQQMIDMDKVVHVTAFCGKPLA----HGTKCGSYVVP
1BWO Chain:A ((2-89))
-----DCGHVDSLV-RPCLSYVQGG-P--GPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYTISLNIDCSR----
General information:
TITO was launched using:
RESULT:
Template:
1BWO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18538 for 471 contacts (-39.4/contact) +
2D Compatibility (PS) -7382 + (NN) -82 + (LL) 456
1D Compatibility (HY) -1600 + (ID) 1000
Total energy: -28146.0 ( -59.76 by residue)
QMean score : 0.167
(partial model without unconserved sides chains):
PDB file :
Tito_1BWO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BWO-query.scw
PDB file :
Tito_Scwrl_1BWO.pdb
: