Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------------------------------------------------------AITCGRVDTALAPCLGYLQGGPGPSAQC---CGGVRNLNSAAV-----------TTPDRQAACNCLKSAAGSIS-----RLNANNAAALPGKCVVNIPYKISTSTNCATIRV-------
1QPO Chain:A ((116-284))
IATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAVRTGGGVNHRLGLGDAALIKDNHVAA-AGSVVDALRAVRNA-----APDLPCEVEVDSLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATY-AETGVDY---LAVGALTHSVRVLDIGLDM
General information:
TITO was launched using:
RESULT:
Template:
1QPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27345 for 415 contacts (-65.9/contact) +
2D Compatibility (PS) -8930 + (NN) -3666 + (LL) -260
1D Compatibility (HY) -2400 + (ID) 900
Total energy: -43501.0 ( -104.82 by residue)
QMean score : 0.369
(partial model without unconserved sides chains):
PDB file :
Tito_1QPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QPO-query.scw
PDB file :
Tito_Scwrl_1QPO.pdb
: