Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ITCGQVASSISPCVNYVKSG---GA-------------------VPAACCNGIRSLNSAAKTTADRQATCNCLKQASGAIK---GL-------NPSLAAGLPGKCGVSVPYKISTSTNCAAVK
1PSY Chain:A ((25-121))
-------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--RCMRQ---------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22306 for 491 contacts (-45.4/contact) +
2D Compatibility (PS) -6537 + (NN) -1607 + (LL) 1848
1D Compatibility (HY) -3600 + (ID) 650
Total energy: -32852.0 ( -66.91 by residue)
QMean score : 0.299
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: