Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------------------------------------------------VTCGQVSS--SLAPCIAYLQKGGTPAPGC---CNGVKSLVGAAQ-----------TTADKQAVCNCLKGAAGQVP-----GLNNQYAQSLPSLCGVNIPYKISTSTNCASIKF-------
1QPO Chain:A ((116-284))
IATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAVRTGGGVNHRLGLGDAALIKDNHVAAAGSVVDALRAVRNA-APDLPCEVEVDSLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATY-AETGVDY---LAVGALTHSVRVLDIGLDM
General information:
TITO was launched using:
RESULT:
Template:
1QPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39390 for 456 contacts (-86.4/contact) +
2D Compatibility (PS) -9455 + (NN) -4655 + (LL) -296
1D Compatibility (HY) -2800 + (ID) 750
Total energy: -57346.0 ( -125.76 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_1QPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QPO-query.scw
PDB file :
Tito_Scwrl_1QPO.pdb
: