Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DQQVSACQNDIDALWRSCKQFVQKEGPKMPPSEDCCKTIKALDA--------HASCICDYVGSPDARNK--LDLDKVFFVTKQCGVTVPKGCGSKQD
1AFH Chain:A ((3-80))
-----SCGQVASAI-APCISYARGQGS--GPSAGCCSGVRSLNNAARTTADRRAACNC--L-KNAAAGVSGLNAGNAASIPSKCGVSIP--------
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21910 for 489 contacts (-44.8/contact) +
2D Compatibility (PS) -7096 + (NN) -1950 + (LL) 456
1D Compatibility (HY) -3600 + (ID) 900
Total energy: -35000.0 ( -71.57 by residue)
QMean score : 0.299
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: