Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QAGGCASQLGNLNVCAPYVV----PGAVNTN-------PSQECCAALSGVNHDCMCNTLRV-----------------------ASQLPSSCNLAALNCGN
2LVF Chain:A ((16-106))
---------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLSPMRCP-
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27381 for 314 contacts (-87.2/contact) +
2D Compatibility (PS) -5908 + (NN) -328 + (LL) 308
1D Compatibility (HY) -6000 + (ID) 1000
Total energy: -40309.0 ( -128.37 by residue)
QMean score : 0.373
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: