Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QNCSAAIGELMTCGPYVL----PGN-NG-------APSEQCCSALRAVNHGCLCETINI-----------------------ISSLPDHCSLPAVNCAS
2LVF Chain:A ((16-106))
-------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLSPMRCP-
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30123 for 306 contacts (-98.4/contact) +
2D Compatibility (PS) -5610 + (NN) 199 + (LL) 532
1D Compatibility (HY) -5200 + (ID) 650
Total energy: -40852.0 ( -133.50 by residue)
QMean score : 0.479
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: