Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QPSACSTQLN--NLSVCAPFVV----PGAP----DSTP-----------SADCCTALQTIDDACMCSTLRI----------------------ASRLPSHCNLTPVTCDVNA
1PSY Chain:A ((15-120))
-SQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV---RCMR--
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36200 for 432 contacts (-83.8/contact) +
2D Compatibility (PS) -6485 + (NN) -2521 + (LL) 288
1D Compatibility (HY) -5600 + (ID) 700
Total energy: -51218.0 ( -118.56 by residue)
QMean score : 0.341
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: