Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGKCGKTPAEKVALKLAPCAKAAQDPGARPPAACCAAVRDIGTHQ------SHACLCAVLLSSTVRRS-GVKPEVAITIPKRCKLANR-PVGYKCGGLMTTYDGLV
1SIY Chain:A ((2-82))
-------TCGQVQGNLAQCIGFLQKG-GVVPPSCCTGVKNILNSSRTTADRRAVCSC--LKA-AAGAVRGINPNNAEALPGKCGVNIPYKIS--------------
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38069 for 544 contacts (-70.0/contact) +
2D Compatibility (PS) -7908 + (NN) -7825 + (LL) 740
1D Compatibility (HY) -3600 + (ID) 900
Total energy: -57562.0 ( -105.81 by residue)
QMean score : 0.317
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: