Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QRVCGMSKEGFQACEPSVSSANPHPPPPSPACCMALNDA--------DLQ--CFCFFKNSKMLNAY-GIDFDRATALPVQCNLVKSFHC
1SIY Chain:A ((2-79))
--TCGQVQGNLAQCIGFLQKG-G---VVPPSCCTGVKNILNSSRTTADRRAVCSCL-KAA--AGAVRGINPNNAEALPGKCGVNIPY--
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22887 for 456 contacts (-50.2/contact) +
2D Compatibility (PS) -6899 + (NN) -3730 + (LL) 408
1D Compatibility (HY) -2800 + (ID) 900
Total energy: -36808.0 ( -80.72 by residue)
QMean score : 0.240
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: