Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VVQGQGACNA--ATLQPCLAASKGTAAPTTQCCAAVKNVGG---AAGGPQCLCSLTTSALARANGVNPDAAMAIPQKCGLAVP----KGFTCNNKPVPGS
1T12 Chain:A ((1-90))
----AITCGQVTSNLAPCLAYLRNTG-PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKV-----
General information:
TITO was launched using:
RESULT:
Template:
1T12.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27511 for 525 contacts (-52.4/contact) +
2D Compatibility (PS) -8294 + (NN) -2833 + (LL) 188
1D Compatibility (HY) -5200 + (ID) 1200
Total energy: -44850.0 ( -85.43 by residue)
QMean score : 0.514
(partial model without unconserved sides chains):
PDB file :
Tito_1T12.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T12-query.scw
PDB file :
Tito_Scwrl_1T12.pdb
: