Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GSDCQNDIQMLETTCYKYVAKDAPTSPPSQECCDTMNGVDV----------PCVCSYLGAPGIKE--NISMEKVFYVAQQCGVSIP-----GNCGGSKRA
1AFH Chain:A ((1-92))
AISCGQVASAI-APCISYARGQGS--GPSAGCCSGVRSLNNAARTTADRRAACNC-LKN--AAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV--
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39558 for 536 contacts (-73.8/contact) +
2D Compatibility (PS) -7956 + (NN) -2759 + (LL) 348
1D Compatibility (HY) -2000 + (ID) 750
Total energy: -52675.0 ( -98.27 by residue)
QMean score : 0.411
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: